An improved formulation for empirical modeling of magnetic storm effects in neutral thermospheric composition and temperature is utilized in a study of two disturbed periods. The formulation, which incorporates the prior history of the heat input rather than a single phase delay, is based on a Fourier integral representation of an existing theoretical model. This results in an improved representation of the detailed time variatons and the better carry-over of model parameters from one storm to the other and provides a basis for theoretical interpretation.