A Dynamic Fluid Kinetic (DyFK) simulation is conducted to study the H+/O+ flows and distribution functions in the high-latitude dynamic transition region, specifically from 1000 km to about 4000 km altitude. Here, the collisional-to-collisionless transition region is that region where Coulomb collisions have significant but not dominant effects on the ion distributions. In this study, a simulation flux tube, which extends from 120 km to 3 RE altitude, is assumed to experience a pulse of auroral effects for approximately 20 minutes, including both soft electron precipitation and transverse wave heating, and then according to different geophysical circumstances, either to relax following the cessation of such auroral effects or to be heated further continuously by waves with power at higher frequencies. Our principal purpose in this investigation is to elicit the characteristic ion distribution functions in the auroral transition region, where both collisions and kinetic processes play significant roles. The characteristics of the simulated O+ and H+ velocity distributions, such as kidney bean shaped H+ distributions, and O+ distributions having cold cores with upward folded conic wings, resemble those observed by satellites at similar altitudes and geographic conditions. From the simulated distribution function results under different geophysical conditions, we find that O+-O+ and O+-H+ collisions, in conjunction with the kinetic and auroral processes, are key factors in the velocity distributions up to 4000 km altitude, especially for the low speed portions, for both O+ and H+ ions.